Generating information-dense promoter sequences with optimal string packing
Virgile Andreani*, Eric J. South*, Mary J. Dunlop
Introduced a computational approach to pack TF binding sites densely in DNA.
Publications
A molecular toolkit of cross-feeding strains for engineering synthetic yeast communities
Huadong Peng, Alexander P. S. Darlington, Eric J. South, Hao-Hong Chen, Wei Jiang, Rodrigo Ledesma-Amaro
Supported efforts to engineer auxotrophic and overexpression yeast strains for stable synthetic co-cultures via metabolite exchange.
Spontaneously establishing syntrophic yeast communities improve bioproduction
Simran Aulakh*, Lara Sellés Vidal*, Eric J. South*, Sreejith Varma, Lucia Herrera Dominguez, Huadong Peng, Markus Ralser, Rodrigo Ledesma-Amaro
High-throughput workflows revealed synergistic yeast communities that enhanced bioproduction through spontaneous cross-feeding.
Transcriptional Tuning of Mevalonate Pathway Enzymes to Identify the Impact on Limonene Production in Escherichia coli
Jonghyeon Shin*, Eric J. South*, Mary J. Dunlop
Systematically tuned pathway enzymes to quantify effects on limonene production in E. coli.